Well, I don't see a big difference... Maybe a some timing issue?
As outlined earlier, I would try to:
double check the current mappings which should be exactly the same at the moment on both installations:
ir-keytable -r -s rc0
I would then run the irw command on LE 9.80 and press / release any RC button quickly to check online what happens - if you receive always the same number of commands (instead of just one) or if it is so sensitive to length of the push (and you receive for instance sometimes 3, sometimes 5 or even more commands in quick sequence).
You may also try to play with -D and -P parameters of ir-keytable to increase default autorepeat values.
-P, --period=PERIOD Sets the period to repeat a keystroke
-D, --delay=DELAY Sets the delay before repeating a keystroke
If nothing works, I would try to make a backup and install the latest fresh LE 9.80 Nightly from scratch.