1) PT works here on HDMI but I didn't test S/PDIF in about 4 years (extracting the AVR to cable it is complicated) so that might be different.
3) Read the big fat warning on AMLGX in public release notes
4) Read the big fat warning on AMLGX in public release notes
5) It's unusual but happens occasionally.. easily recovered from
6) Already explained in the other thread (boot from SD card so emmc is not in-use and run "emmctool w /path/to/dd-backup.tar.gz" to write the dd backup of the factory image back to emmc).
As written in the release notes, AMLGX will not be great for all users. If it works for you that's great. If it doesn't work for you (and it appears that way) then you should have low expectations of any major development work to improve it. I'd like to do more but my coding skills are limited and most of the long-known problems require the attentions of people who write kernel driver code.