If you are having issues please post full debug logs - otherwise we devs are unable to know the exact circumstances and background and won't be able to resolve potential issues.
Enable debug logging in kodi, reboot, reproduce the issue then ssh in and run "pastekodi" (or use the log upload function in libreelec settings).
The reason for not enabling 30/29.97/25Hz and instead allowing kodi to use double rates is that otherwise you'll run into issues with interlaced videos - they report as eg 25 Hz frame rate while they contain 50 fields and kodi will output that as 50 deinterlaced frames - and you'll get hefty issues trying to play 50 frames if kodi chose to setup display with 25 frames per second.
so long,
Hias