LE 10 / Kodi Matrix has moved from firmware display driver (fkms - controlled with config.txt) to a standard kernel display driver (kms controlled with cmdline.txt).
I think what you are asking to do is to have both hdmi ports connected, but be able to switch which one is disabled.
Have a look here.
I think if you add to cmdline.txt (end of existing line):
Then the first hdmi port will be enabled, and the second will be disabled. If instead you do:
Then the first hdmi port will be disabled, and the second will be enabled.
Note that CEC only works (with LE) on the first hdmi port, so if you use that with one display, then make sure it is first.