There are two major issues in the log.
Thread 1 (Thread 0x7f0a06ea86c0 (LWP 5007)):
#0 0x00007f0a62182aaa in free () from /usr/lib/libc.so.6
#1 0x0000000000ee2952 in dbiplus::SqliteDataset::close() ()
#2 0x0000000000c56ff3 in CVideoDatabase::GetEpisodesByWhere(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, CDatabase::Filter const&, CFileItemList&, bool, SortDescription const&, int) ()
#3 0x0000000000c57e9f in CVideoDatabase::GetItems(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, CFileItemList&, CDatabase::Filter const&, SortDescription const&) ()
#4 0x00000000014c6a22 in XFILE::CSmartPlaylistDirectory::GetDirectory(CSmartPlaylist const&, CFileItemList&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool) ()
#5 0x00000000014c7bfb in XFILE::CSmartPlaylistDirectory::GetDirectory(CURL const&, CFileItemList&) ()
#6 0x00000000014a44a7 in XFILE::CDirectory::GetDirectory(CURL const&, std::shared_ptr<XFILE::IDirectory> const&, CFileItemList&, XFILE::CDirectory::CHints const&) ()
[...]
1. Kodi is crashing when closing the video database. May be a broken sqlite DB file.
Apr 18 01:49:06.662671 KodiServer kernel: EXT4-fs (sdc1): warning: mounting fs with errors, running e2fsck is recommended
Apr 18 01:49:06.665733 KodiServer kernel: EXT4-fs (sda): warning: mounting fs with errors, running e2fsck is recommended
Apr 18 01:49:06.679060 KodiServer kernel: EXT4-fs (sdb): warning: mounting fs with errors, running e2fsck is recommended
2. The file systems on your HDs (except the NVME) are broken.
I do recommend a system backup (via LE settings) to an external media first, then fixing the errors before trying any larger updates.