Does anyone have any idea why this is happening?
iMX6 support in LE is in a semi-abandoned state. Our assumption is that there are enough commercial users of iMX6 chips for media support to be maintained upstream without us needing to do anything. That assumption might be wrong and some testing might be needed; although the challenge will be finding anyone with time and hardware to do it.
I so have a Cubox-i in a cupboard somewhere (it last saw daylight around 2022) but I'm submerged in other things at the moment and can't promise I'll be able to dig it out any time soon.
NB: it would be interesting to see the "pastekodi" output after demonstrating the problem with Kodi in debug mode. Share the URL and we can maybe see more about what's going on.