Could you test if you also see this behaviour with irw (while kodi and eventlircd are running) and with ir-keytable -t (kodi and eventlircd need to be stopped, watch for the KEY_xxx events)?
BTW: You can ignore the lirc_options.conf warning, it is harmless and already fixed in the upcoming 8.2 version.
Instead of running ir-keytable -c -w ... from autostart.sh I'd recommend creating a .config/rc_maps.cfg file with the content * * my_remote - otherwise the udev rule which sets up the keytable (via /etc/rc_maps.cfg, loading the libreelec-combined keymap) could race with your manual ir-keytable setup.
so long,
Hias